# ROCKET Docs

## ROCKET Docs

- [ROCKET User Guide](https://rocket-9.gitbook.io/rocket-docs/rocket-user-guide.md): Documentation, installation instructions, and tutorials for ROCKET
- [Installing ROCKET](https://rocket-9.gitbook.io/rocket-docs/getting-started/installing-rocket.md): How to get started
- [Quickstart](https://rocket-9.gitbook.io/rocket-docs/getting-started/quickstart.md)
- [Publish your docs](https://rocket-9.gitbook.io/rocket-docs/getting-started/publish-your-docs.md)
- [Editor](https://rocket-9.gitbook.io/rocket-docs/tutorials/editor.md)
- [Markdown](https://rocket-9.gitbook.io/rocket-docs/tutorials/markdown.md)
- [Images & media](https://rocket-9.gitbook.io/rocket-docs/tutorials/images-and-media.md)
- [Interactive blocks](https://rocket-9.gitbook.io/rocket-docs/tutorials/interactive-blocks.md)
- [OpenAPI](https://rocket-9.gitbook.io/rocket-docs/tutorials/openapi.md)
- [Integrations](https://rocket-9.gitbook.io/rocket-docs/tutorials/integrations.md)
- [Latent State of a Human Serpin with MSA Subsampling](https://rocket-9.gitbook.io/rocket-docs/latent-state-of-a-human-serpin-with-msa-subsampling.md): Using subsampling and data scoring before gradient-driven refinement
- [Low Resolution GroEL Sub-Tomogram Average](https://rocket-9.gitbook.io/rocket-docs/low-resolution-groel-sub-tomogram-average.md): Model Building at Low Resolution
- [Launch with Your Own X-ray Data](https://rocket-9.gitbook.io/rocket-docs/launch-with-your-own-x-ray-data.md): Setting up ROCKET with your own datasets -- X-ray crystallography
- [Launch with Your Own Cryo-EM Data](https://rocket-9.gitbook.io/rocket-docs/launch-with-your-own-cryo-em-data.md): Setting up ROCKET with your own datasets -- CryoEM/ET half maps
- [Track Refinement with Weights & Biases](https://rocket-9.gitbook.io/rocket-docs/track-refinement-with-weights-and-biases.md): Log ROCKET refinement metrics and outputs in real time with W\&B
- [Run ROCKET Remotely with Phenix](https://rocket-9.gitbook.io/rocket-docs/run-rocket-remotely-with-phenix.md): Launch ROCKET on the Phenix server when you do not have local GPU access
- [rk.preprocess](https://rocket-9.gitbook.io/rocket-docs/api/rk.preprocess.md): ROCKET Preprocessing Command
- [rk.refine](https://rocket-9.gitbook.io/rocket-docs/api/rk.refine.md): Run refinement with ROCKET
- [rk.msacluster](https://rocket-9.gitbook.io/rocket-docs/api/rk.msacluster.md): Subsample sequences in a MSA with DBSCAN and uniform random sampling
- [rk.score](https://rocket-9.gitbook.io/rocket-docs/api/rk.score.md): Score MSA subsamples against experimental likelihood
- [rk.config](https://rocket-9.gitbook.io/rocket-docs/api/rk.config.md): Generate ROCKET default configuration files.


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